Yes, you are right, but you can do the following:
In the ProcessGeo module, select the Permute submenu and click Edit. Then, select Permute and choose the X->Y->Z->X option.
Click OK and then permute. Now what used to be the Y-direction has turned into Z, while maintaining the orientation of the sample.
You can then Save and Rename the structure on your disk so that you remember this fact.
Then run AddiDict to get results on the original Y-direction.
To run AddiDict on the original X-direction, hit permute again and repeat the procedure.
Best regards,
Anne